Re: [AMBER] Calculating parameters for glycosides

From: FyD <fyd.q4md-forcefieldtools.org>
Date: Wed, 26 Feb 2014 07:42:58 +0100

Dear Raghuvir,

> As per the tutorial small molecule parameters can be calculated by
> antechamber; while the carbohydrates one can use glycam.. How about
> glycosides. How can one generate parameters for the same

You could used R.E.D. Server or better R.E.D. Server Dev. to generate
molecular fragments; see for instance:
  http://q4md-forcefieldtools.org/REDDB/projects/F-72/

See tutorials at: http://q4md-forcefieldtools.org/Tutorial/

regards, Francois



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Received on Tue Feb 25 2014 - 23:00:03 PST
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