On Mon, Feb 10, 2014, David Winogradoff wrote:
>
> Thank you. My apologies for lacking clarity. Your guess is correct, I am
> modifying the side chain of a non-terminal lysine. I know to examine the N
> (original LYS) - C (ACE) bond, but what other bonds should I examine?
>
> Furthermore, my understanding is to examine these bonds in the prmtop file,
> but my level of expertise in reading prmtop files is not where it should
> be. Could you point me in the direction of a resource for this?
Use parmed.py or rdparm. (Former is recommended).
...dac
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Received on Tue Feb 11 2014 - 04:00:02 PST
