Re: [AMBER] Does chain type matter?

From: David A Case <case.biomaps.rutgers.edu>
Date: Mon, 10 Feb 2014 22:00:28 -0500

On Mon, Feb 10, 2014, David Winogradoff wrote:
>
> I am acetylating a lysine in my PDB using xLeap by adding an "ACE."

This is not very clear (at least to me). Assuming you are modifying the side
chain of a non-terminal lysine, please examine the bonds around the
acetylation site carefully to make sure you have what you want.
 
> Marking per-residue atom chain types.
> (Residues lacking connect0/connect1 -
> these don't have chain types marked:
>
> res total affected
>
> ACE 1
> CGLN 1
> NSER 1
> )
> (no restraints).

Above looks fine...the messages are for information, and are not errors.

...dac


_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Mon Feb 10 2014 - 19:30:02 PST
Custom Search