Re: [AMBER] optimization of the ligand

From: David A Case <case.biomaps.rutgers.edu>
Date: Thu, 6 Feb 2014 08:07:27 -0500

On Thu, Feb 06, 2014, Mary Varughese wrote:
>
> I am trying the binding of a ligand on different nucleic sequences. Is
> it reasonable to use the same ligand library files for the different
> binding modes.

Only you really can figure out the answer. If the binding is non-covalent,
then, yes: it is standard practice to use the same ligand library file for
different binding modes.

...dac


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Received on Thu Feb 06 2014 - 05:30:02 PST
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