[AMBER] protein amide conjugate parameters

From: Nahoum Anthony <nahoum.anthony.strath.ac.uk>
Date: Thu, 6 Feb 2014 12:55:33 -0000

Hi,

I was wondering if someone would have guidance as the correct/best way to
parameterise (atom type and charges) the linking residue between two
proteins that are covalently conjugated together through an amide bond
between the side chain nitrogen of the lysine of one protein to the
(glycine) C-terminus carboxyl of the other protein ?

Many thanks,

Nahoum


_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Thu Feb 06 2014 - 05:00:04 PST
Custom Search