[AMBER] Query on introducing a protein

From: Aditya Padhi <adi.uoh.gmail.com>
Date: Wed, 5 Feb 2014 10:42:10 +0530

Dear All,
        I want to place a protein molecule (appx. 20 kDa in size) into a
viral capsid loop region which is about 7 amino acid long. What I want to
do is to remove the 5 amino acids out from the loop region and place the 20
kDa protein, so that the loop region can accommodate the 20 kDa protein. I
am finding it difficult as the co-ordinates of both the molecules are
different.

Although, this is not related to MD simulation or associated stuff, it
would be grateful if I can get some suggestions.


Thanking you,
Regards
Aditya.
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Received on Tue Feb 04 2014 - 21:30:03 PST
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