[AMBER] VMD lipid in AMBER

From: Rejwan <rejwan_88.yahoo.com>
Date: Fri, 31 Jan 2014 11:40:21 -0800 (PST)

 I am having issue in converting VMD made POPC bi-layer into LEAP compatible lipid.  The  charmm2amber script seems to have some mixed up of atoms in PC, PL and OL residues. That means some of OL residues got PC atoms or so.  Also LEAP complains of  C12 atom in OL residue and so.  

Is there any way to clean them up so that can be imported into LEAP. Thanks.

Rejwan Ali

PS: In earlier mail there is no subject. So please ignore it. 
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Received on Fri Jan 31 2014 - 12:00:03 PST
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