> I have calculated esp charges for BF4 using gaussian G09.While converting
> the log file to the prep file using antechamber, the Fluorine atoms are not
> being recognized and NEWPDB is empty. However, there was no error shown
> while running antechamber. The log file and the corresponding mol2 file are
> fine. I have tried using the -j flag but it did not help. On using -s 2 the
> following are shown
>
> Running: /usr/local/bin/amber12//bin/atomtype -i ANTECHAMBER_AC.AC0 -o
> ANTECHAMBER_AC.AC -p gaff
>
> Running: /usr/local/bin/amber12//bin/prepgen -i ANTECHAMBER_PREP.AC -f int
> -o BF4_ani.prep -rn "MOL" -rf molecule.res
