On Sat, Jan 25, 2014, #YIP YEW MUN# wrote:
>
> Thanks for the prompt reply. I checked my prmtop file and indeed the atom
> O4’ pops up instead of O4*. However, when I use the ambpdb command, O4*
> pops up instead of O4’. Are there any ways to resolve this problem?
We'd need details: what do you mean "pops up"? Which version of AmberTools do
you have? What exact command did you try?
Ambpdb uses the atom names in the prmtop file; I can't recall at anytime, even
in the past, that it would change O4' to O4*.
...dac
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Received on Sat Jan 25 2014 - 06:30:08 PST
