Re: [AMBER] Ptraj's "NO ATOMS DETECTED" problem

From: David A Case <>
Date: Sat, 25 Jan 2014 09:28:31 -0500

On Sat, Jan 25, 2014, #YIP YEW MUN# wrote:

> Thanks for the prompt reply. I checked my prmtop file and indeed the atom
> O4’ pops up instead of O4*. However, when I use the ambpdb command, O4*
> pops up instead of O4’. Are there any ways to resolve this problem?

We'd need details: what do you mean "pops up"? Which version of AmberTools do
you have? What exact command did you try?

Ambpdb uses the atom names in the prmtop file; I can't recall at anytime, even
in the past, that it would change O4' to O4*.


AMBER mailing list
Received on Sat Jan 25 2014 - 06:30:08 PST
Custom Search