On Wed, Jan 15, 2014, Arun Kumar Somavarapu wrote:
>
>
> In your earlier message you suggested me to break the molecule, as i am
> new to Amber may be i will generate files for individual piece but i
> have no idea about next steps (like how to link and proceed).
Linking sugars together to form poly-saccharides is a bit of a specialized
task. Go to the online glycoprotein builder:
http://glycam.ccrc.uga.edu/ccrc/gp/
and see if that will do what you want. Detailed questions posted there (or
here) usually get answered pretty quickly. But you will have to give details
about your chemistry: just saying that what you have is "similar to glucose"
is not enough. If the web site above doesn't help (enough), post *exactly*
what you tried and the what the problem was.
...dac
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Received on Wed Jan 15 2014 - 09:00:02 PST
