On Sat, Dec 28, 2013, Saeed Nasiri wrote:
>
> I am going to run sander for minimization, but "*Segmentation fault*" error
> was printted out in the terminal.
This is a general message that gives no information about the source of the
problem.
General advice: make sure the test cases pass. Look, for example, at the
files in $AMBERHOME/test/dhfr, especially the minimization test. Try to see
if it is different from what you are doing.
The other piece of advice that we repeatedly recommend: run a *short*
simulation, with ntpr=1 and maxcyc=10. See if that provides any information.
...dac
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Received on Sat Dec 28 2013 - 06:00:04 PST
