Re: [AMBER] Brookhaven pdb format

From: <hiyanyuna.gmail.com>
Date: Mon, 9 Dec 2013 13:04:44 +0800

It really works .Thank you very much


2013/12/9 Daniel Roe <daniel.r.roe.gmail.com>

> Hi,
>
> Try using the '-bres' option of ambpdb.
>
> -Dan
>
>
> On Sun, Dec 8, 2013 at 8:22 PM, <hiyanyuna.gmail.com> wrote:
>
> > Hi all,
> > I have used amber to run a md .Now I want to use HBPLUS to analyze the
> > result produced by amber.However ,HBPLUS can only identify the Brookhaven
> > files .I have checked the amber pdb and the Brookhaven formated pdb,and
> > find some difference. What can I do to change the amber formated pdb to
> > Brookhaven formated pdb strictly ? Thank you very much .
> > _______________________________________________
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> >
>
>
>
> --
> -------------------------
> Daniel R. Roe, PhD
> Department of Medicinal Chemistry
> University of Utah
> 30 South 2000 East, Room 201
> Salt Lake City, UT 84112-5820
> http://home.chpc.utah.edu/~cheatham/
> (801) 587-9652
> (801) 585-6208 (Fax)
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> http://lists.ambermd.org/mailman/listinfo/amber
>
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Received on Sun Dec 08 2013 - 21:30:02 PST
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