On Fri, Dec 6, 2013 at 8:14 AM, David A Case <case.biomaps.rutgers.edu>wrote:
> On Thu, Dec 05, 2013, Sajeewa Pemasinghe wrote:
> >
> > I am installing amber12. My compiler is gcc version 4.1.2 20080704 (Red
> Hat
> > 4.1.2-54).
> >
> >
> > After "make serial" I get the error
> >
> > In file alltasks_setup.F90:352
> >
> > my_atm_cnt = natom ! uniprocessor value.
> > 1
> > Error: Symbol 'my_atm_cnt' at (1) has no IMPLICIT type
>
> I think(?) this is related to the very old version of gcc/gfortran you are
> using, although I'm kind of surprised that this particular error doesn't
> seem
> to have been reported before.
>
I
don't see this error:
$ make -j6 install
[snip]
Installation of pmemd.amoeba complete
make[2]: Leaving directory `/home/swails/rls/amber12/src/pmemd.amoeba'
Installation of Amber12 (serial) is complete at Fri Dec 6 17:04:17 EST
2013.
make[1]: Leaving directory `/home/swails/rls/amber12/src'
$ gcc --version
gcc (GCC) 4.1.2 (Gentoo 4.1.2 p1.4)
Copyright (C) 2006 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
It's not the same OS, but it's the same GCC compiler version. my_atm_cnt
is defined in parallel_dat.F90 (outside the #ifdef MPI). Are you
absolutely sure this is the actual released Amber 12 source code with no
modifications? I don't see how this error could occur in an unmodified
copy of the release code.
HTH,
Jason
--
Jason M. Swails
BioMaPS,
Rutgers University
Postdoctoral Researcher
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Received on Fri Dec 06 2013 - 14:30:02 PST
