Re: [AMBER] question

From: Jason Swails <>
Date: Thu, 05 Dec 2013 12:35:57 -0500

On Thu, 2013-12-05 at 17:13 +0000, Zahra Khatti wrote:
> Dear amberists
> I can not load nanotube pdb file to tleap that i saved by nanotube modeler.
> I get an error "Cannot open the input file".

It seems your problem is that tleap either:

a) cannot find your PDB file because it is not in the directory you
started tleap in (or you typed the file name wrong)

b) you do not have read permissions on the file so tleap could not open

That said, Amber is not set up to model nanotubes easily. I would
strongly suggest working through the tutorials
( before attempting such a complex

Final piece of advice: when asking questions give as many details as
possible. You should _always_ give the exact commands you used (or
input files if relevant), as well as the exact output you received.
Without these, we cannot be of help (and will simply ask you for them in
another email).

Good luck,

Jason M. Swails
Rutgers University
Postdoctoral Researcher
AMBER mailing list
Received on Thu Dec 05 2013 - 10:00:02 PST
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