[AMBER] query about atom nomenclature in NOE restraints

From: Thomas Evangelidis <tevang3.gmail.com>
Date: Sat, 23 Nov 2013 14:26:28 +0200

Dear list,

Can anyone explain the difference between proton group "QG" and "QPG" in
$AMBERHOME/dat/map.DG-AMBER file? What does that "P" mean? Is it like a
boolean operator, e.g. HG2 && HG3? I know from IUPAC pseudoatom
nomenclature that QG means gamma-methylene.

thanks,
Thomas

-- 
======================================================================
Thomas Evangelidis
PhD student
University of Athens
Faculty of Pharmacy
Department of Pharmaceutical Chemistry
Panepistimioupoli-Zografou
157 71 Athens
GREECE
email: tevang.pharm.uoa.gr
          tevang3.gmail.com
website: https://sites.google.com/site/thomasevangelidishomepage/
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber

Received on Sat Nov 23 2013 - 04:30:02 PST