Re: [AMBER] AMBER CUDA Installation

From: Massimiliano Porrini <>
Date: Fri, 22 Nov 2013 12:38:44 +0100

Hi all,

I just wanted to add my contribute to the following topic
(also to know if I have done the correct thing):

I had exactly the same error message while compiling serial CUDA-enabled
pmemd of Amber12.
My soft/hard -ware settings are as follow:

- Ubuntu 13.04 (raring)
- gcc 4.7.3
- Nvidia driver version: 304.88
- 1 Tesla K20c

Just following Scott Le Grand's advice, I added "-lstdc++" to the
LDFLAGS of the config.h file located in $AMBERHOME/AmberTools/src/ ,
to be more specific:


and this allowed to me to successfully build the executable pmemd.cuda ,
which in turn successfully passed all the test cases.

I would be pleased to know if I proceeded in the correct way though
(which apparently worked fine).


Dr Massimiliano Porrini
Institut Européen de Chimie et Biologie (IECB)
CNRS UMR 5248 Chimie et Biologie des Membranes et des Nano-objets (CBMN)
2, rue Robert Escarpit
33607 Pessac Cedex
Tel   : 33 (0)5 40 00 30 31
Fax : 33 (0)5 40 00 22 00
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Received on Fri Nov 22 2013 - 04:00:02 PST
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