Re: [AMBER] AMBER CUDA Installation

From: Massimiliano Porrini <m.porrini.iecb.u-bordeaux.fr>
Date: Fri, 22 Nov 2013 12:38:44 +0100

Hi all,

I just wanted to add my contribute to the following topic
(also to know if I have done the correct thing):

   http://archive.ambermd.org/201304/0492.html

I had exactly the same error message while compiling serial CUDA-enabled
pmemd of Amber12.
My soft/hard -ware settings are as follow:

- Ubuntu 13.04 (raring)
- gcc 4.7.3
- Nvidia driver version: 304.88
- 1 Tesla K20c

Just following Scott Le Grand's advice, I added "-lstdc++" to the
LDFLAGS of the config.h file located in $AMBERHOME/AmberTools/src/ ,
to be more specific:

LDFLAGS= $(CUSTOMBUILDFLAGS) $(AMBERBUILDFLAGS) -lstdc++

and this allowed to me to successfully build the executable pmemd.cuda ,
which in turn successfully passed all the test cases.

I would be pleased to know if I proceeded in the correct way though
(which apparently worked fine).

Thanks!


-- 
Dr Massimiliano Porrini
Institut Européen de Chimie et Biologie (IECB)
CNRS UMR 5248 Chimie et Biologie des Membranes et des Nano-objets (CBMN)
2, rue Robert Escarpit
33607 Pessac Cedex
FRANCE
Tel   : 33 (0)5 40 00 30 31
Fax : 33 (0)5 40 00 22 00
http://www.iecb.u-bordeaux.fr/
Emails: m.porrini.iecb.u-bordeaux.fr
            M.Porrini.ed.ac.uk
            maxp.iesl.forth.gr
            mozz76.gmail.com
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Received on Fri Nov 22 2013 - 04:00:02 PST
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