On Mon, 2013-11-18 at 18:27 +0530, anu chandra wrote:
> Dear Amber users,
>
> I am working with protein-ligand system and I am using amber 11 for
> simulation. I would like to freeze a particular angle between three
> aminoacid residues to restrict some specific movement of a helix during the
> entire simulation. How can proceed ahead with creating an Sander input for
> such a simulation? Waiting for your valuable reply.
Look in chapter 6 of the Amber manual where it describes NMR restraints.
Good luck,
Jason
--
Jason M. Swails
BioMaPS,
Rutgers University
Postdoctoral Researcher
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Mon Nov 18 2013 - 05:30:02 PST
