Dear all,
I tried clean installation once again, by taking all the suggestions into
account that have been given before.
As previously experienced, I got following error:
use netcdf, only : nf90_double, nf90_float
1
Fatal Error: Wrong module version '0' (expected '9') for file 'netcdf.mod'
opened at (1)
Further, as per Jeson's suggestion "Try deleting the netcdf.mod file and
then recompiling",
I did "rm include/netcdf.mod "
However, I got following error:
gfortran -DBINTRAJ -c -O3 -mtune=native -ffree-form
-I../../AmberTools/src/pbsa -I../../AmberTools/src/sqm
-I../../AmberTools/src/rism -I../../include -I/opt/amber12/include
-I/opt/amber12/include -o ncsu-umbrella.o ncsu-umbrella.F90
ncsu-umbrella.F90:9.4:
use netcdf, only : nf90_double, nf90_float
1
Fatal Error: Can't open module file 'netcdf.mod' for reading at (1): No
such file or directory
I just gave a try as follows:
*cp /opt/amber12/AmberTools/include/netcdf.mod /opt/amber12/include/*
This made my installation complete:
Installation of Amber12 (serial) is complete at Mon Nov 4 07:05:07 EST
2013.
make[1]: Leaving directory `/opt/amber12/src'
Finally, I ran "make test" which seem successful:
Finished serial test suite for Amber 12 at Mon Nov 4 08:16:21 EST 2013.
make[2]: Leaving directory `/opt/amber12/test'
529 file comparisons passed
9 file comparisons failed
0 tests experienced errors
Test log file saved as
/opt/amber12/logs/test_amber_serial/2013-11-04_07-34-24.log
Test diffs file saved as
/opt/amber12/logs/test_amber_serial/2013-11-04_07-34-24.diff
make[1]: Leaving directory `/opt/amber12/test'
Summary of AmberTools serial tests:
555 file comparisons passed
0 file comparisons failed
1 tests experienced errors
Test log file saved as
/opt/amber12/logs/test_at_serial/2013-11-04_07-07-14.log
No test diffs to save!
I am not sure whether there is problem with my installation OR a common
issue with Debian 7.
Thank you for the suggestions and instructions !!!
-- Joshi
On Fri, Nov 1, 2013 at 8:11 PM, David A Case <case.biomaps.rutgers.edu>wrote:
> On Fri, Nov 01, 2013, Dhananjay wrote:
>
> > "./configure gnu" followed by "make install", I am now getting another
> > error as follows:
> >
> > fftw3.F90:10: Error: Can't open included file 'fftw3.f03'
>
> Things are quite weird here. I'd suggest untarring your
> AmberTools13.tar.bz2
> file to a fresh directory and starting fresh. Something odd seems to be
> going
> on that we can't understand.
>
> ...dac
>
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
--
--------------------------------------------------------------
Dhananjay Joshi
TIGP Graduate Student
Institute of Biological Chemistry
Academia Sinica, Taipei-115, Taiwan
--------------------------------------------------------------
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Received on Mon Nov 04 2013 - 05:30:02 PST
