Re: [AMBER] Sander error (AmberTools 13 & Amber10)

From: Concha, Monica <Monica.Concha.ARS.USDA.GOV>
Date: Thu, 31 Oct 2013 16:51:12 +0000

Hello Daniel Roe,
I guess it is GNU
Amber10 was installed for somebody else and he's not working here anymore.

Thanks

Monica C. Concha
Physical Science Technician
Cotton Structure and Quality Research
Southern Regional Research Center
1100 Robert E. Lee Blvd.
New Orleans, LA 70124
monica.concha.ars.usda.gov
phone: 504-286-4252

-----Original Message-----
From: Daniel Roe [mailto:daniel.r.roe.gmail.com]
Sent: Thursday, October 31, 2013 10:39 AM
To: AMBER Mailing List
Subject: Re: [AMBER] Sander error (AmberTools 13 & Amber10)

Hi,

On Thu, Oct 31, 2013 at 9:24 AM, Concha, Monica <Monica.Concha.ars.usda.gov> wrote:
> The output is as follows:
> /home/glenn/amber10_distribution/amber10/bin/sander: error while
> loading shared libraries: libfortran.so: cannot open shared object
> file: No such file or directory

This kind of error is usually related to your system's environment not being set up properly, such as your LD_LIBRARY_PATH not containing the 'lib' directory of whatever compiler you used to compile sander. What compiler did you use to make sander?

-Dan

--
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Daniel R. Roe, PhD
Department of Medicinal Chemistry
University of Utah
30 South 2000 East, Room 201
Salt Lake City, UT 84112-5820
http://home.chpc.utah.edu/~cheatham/
(801) 587-9652
(801) 585-6208 (Fax)
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