Re: [AMBER] Sander error (AmberTools 13 & Amber10)

From: Concha, Monica <Monica.Concha.ARS.USDA.GOV>
Date: Thu, 31 Oct 2013 16:51:12 +0000

Hello Daniel Roe,
I guess it is GNU
Amber10 was installed for somebody else and he's not working here anymore.


Monica C. Concha
Physical Science Technician
Cotton Structure and Quality Research
Southern Regional Research Center
1100 Robert E. Lee Blvd.
New Orleans, LA 70124
phone: 504-286-4252

-----Original Message-----
From: Daniel Roe []
Sent: Thursday, October 31, 2013 10:39 AM
To: AMBER Mailing List
Subject: Re: [AMBER] Sander error (AmberTools 13 & Amber10)


On Thu, Oct 31, 2013 at 9:24 AM, Concha, Monica <> wrote:
> The output is as follows:
> /home/glenn/amber10_distribution/amber10/bin/sander: error while
> loading shared libraries: cannot open shared object
> file: No such file or directory

This kind of error is usually related to your system's environment not being set up properly, such as your LD_LIBRARY_PATH not containing the 'lib' directory of whatever compiler you used to compile sander. What compiler did you use to make sander?


Daniel R. Roe, PhD
Department of Medicinal Chemistry
University of Utah
30 South 2000 East, Room 201
Salt Lake City, UT 84112-5820
(801) 587-9652
(801) 585-6208 (Fax)
AMBER mailing list
This electronic message contains information generated by the USDA solely for the intended recipients. Any unauthorized interception of this message or the use or disclosure of the information it contains may violate the law and subject the violator to civil or criminal penalties. If you believe you have received this message in error, please notify the sender and delete the email immediately.
AMBER mailing list
Received on Thu Oct 31 2013 - 10:00:02 PDT
Custom Search