Re: [AMBER] bug when using the "parmout" command ?

From: Vlad Cojocaru <>
Date: Thu, 24 Oct 2013 21:46:11 +0200

I found the problem ... I had another application that was loading its
own python and for some reason this was becoming the default python on
the system after login.
I removed this application from my environment, I updated and recompiled
the whole AMBER tree and now everything works fine ...

Thanks a lot for the help

On 10/24/2013 07:43 PM, Jason Swails wrote:
> On Thu, Oct 24, 2013 at 1:36 PM, Vlad Cojocaru <
>> wrote:
>> HI Jan-Philip,
>> Sorry ... A rather stupid question but I am not that good with python ..
>> How do I get the entire python traceback ?
> That's actually a ParmEd implementation detail. Usually they're always
> printed but I suppressed them so I could use the exception machinery to do
> my bidding as error message reporting.
> If you use the "-d" argument with ParmEd, it will print the full traceback
> instead of suppressing.
> -d -i test_input_script

Dr. Vlad Cojocaru
Max Planck Institute for Molecular Biomedicine
Department of Cell and Developmental Biology
Röntgenstrasse 20, 48149 Münster, Germany
Tel: +49-251-70365-324; Fax: +49-251-70365-399
Email: vlad.cojocaru[at]
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Received on Thu Oct 24 2013 - 13:00:02 PDT
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