Hi Jason,
I am using the AMBER tutorials which you can find in the below link:
http://ambermd.org/tutorials/advanced/tutorial15/Tutorial2.xhtml
And yes i am using the same commands on the same input files but the
results are different.
The command used for .mol2 file:
antechamber –i acn.pdb -fi pdb -o acn.mol2 -fo mol2 -c bcc -nc 1
For .frcmod file:
parmchk -i acn.mol2 -f mol2 -o frcmod.acn
Kindly find the input files attached below that i have used:
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- application/octet-stream attachment: bmim.mol2
Received on Mon Oct 07 2013 - 09:00:03 PDT
