[AMBER] Generating topology files for two proteins in a single input pdb

From: George Green <soyo.green.gmail.com>
Date: Sun, 29 Sep 2013 22:26:37 +0100

I have two proteins which I have put into a single pdb file so they are
around 10 angstroms apart.

However if I separate the two molecules using TER cards they are treated as
being the same molecule.

Could anyone advise me as to the correct way to set up the amber parameter
(top & inpcrd) files?

Many thanks.
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Received on Sun Sep 29 2013 - 14:30:03 PDT