Re: [AMBER] Xleap

From: arundhati dutta <>
Date: Fri, 6 Sep 2013 14:09:33 -0500

Hi Lindsay,

You have to keep your file in the current directory with which you are
working now. For example

if you started the leap from root, you have to keep the file in the root

Thank You

On Fri, Sep 6, 2013 at 1:37 PM, Lindsay Morrison <>wrote:

> Hi all, this is a ridiculously simple question, but I can't seem to figure
> it out. I'm new to amber and trying to load a pdb file into xleap. The
> problem I'm having is that I don't seem to have the .pdb file in the right
> directory. (so far I have tried $AMBERHOME and a variety of sub
> directories).
> Here is my output error: pept= loadpdb NA12K_2plus.pdb
> Could not open file NA12K_2plus.pdb: not found
> Where should this file be in order for it to be loaded correctly?
> Thanks,
> Lindsay Morrison
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Received on Fri Sep 06 2013 - 12:30:03 PDT
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