Seongeun,
Joung and Cheatham (the J and C in "ionsjc") only explored ion parameters
for the three common rigid water models (in the literature at least). These
far and away receive the most use in AMBER. Very few users even make
routine use of the other water models, much less simulate ionic solutions
with them.
Hhowever, the analyses used to benchmark ions are fairly straightforward in
AMBER, and I'm sure the community would appreciate such numbers for as yet
untested water models.
Regards,
Brian
--
================================ Current Address =======================
Brian Radak : BioMaPS
Institute for Quantitative Biology
PhD candidate - York Research Group : Rutgers, The State
University of New Jersey
University of Minnesota - Twin Cities : Center for Integrative
Proteomics Room 308
Graduate Program in Chemical Physics : 174 Frelinghuysen Road,
Department of Chemistry : Piscataway, NJ
08854-8066
radak004.umn.edu :
radakb.biomaps.rutgers.edu
====================================================================
Sorry for the multiple e-mail addresses, just use the institute appropriate
address.
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Received on Thu Aug 29 2013 - 07:00:02 PDT