Dear Sahin
Here step wise procedure
load crd file in VMD
............extension.........analysis................RMSD Trajectory
Tool.........select protein and align ............then I think it will not
move out of window
'''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''
*Md Homaidur Rahman*
PhD Research Scholar
Computational Biophysics Lab.
Department of Biotechnology
Indian Institute of Technology-Madras
Chennai-600 036
*Mobile No = +91- 7845991785*
'''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''
On 29 August 2013 11:34, Aylin Sahin <aylin_sahin88.yahoo.de> wrote:
> Dear AMBER user,
> I want to make a movie using VMD and I already did one. But my protein
> has many frames, so that it sometimes moves out of the window or it
> becomes very small.
> I actually want the protein to stay on one place, not moving around, so
> that the dynamics of this molecule could be watched.
> How can I do this?
>
> Thank you in advance!Aylin Sahin
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Thu Aug 29 2013 - 00:30:03 PDT
