Re: [AMBER] Pucker Command In Cpptraj

From: Hamed S. Hayatshahi <biophysicist1981.yahoo.com>
Date: Mon, 26 Aug 2013 12:55:54 -0600

Hi
Those numbers are pseudorotation phase values. You can relate them to sugar puckering types when you refer to figure 3 of Altona and Sundaralingam paper in 1972 which is freely available online.

Hamed S. Hayatshahi
PhD student of Medicinal Chemistry
University of Utah
سيد حامد سادات حياتشاهي
دانشجوي دكتراي شيمي دارويي
دانشگاه يوتا

On Aug 26, 2013, at 10:31 AM, arundhati dutta <arundhatidut.gmail.com> wrote:

> Hello,
>
> Is there any way to know the type of sugar puckering. I have used the
> pucker command but it gave me some bunch of numerical data.
>
> Thank You
> Arundhati
>
> --
> *A.Dutta (PPG INSTITUTE OF TECH ,MCA)
> *
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Received on Mon Aug 26 2013 - 12:00:02 PDT
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