Re: [AMBER] Charmmgui pdb file error

From: David A Case <case.biomaps.rutgers.edu>
Date: Thu, 1 Aug 2013 09:44:55 -0400

On Thu, Aug 01, 2013, Giorgos Lamprinidis wrote:
>
> So I downloaded the step5_assembly.pdb file, I converted it using
> charmmlipid2amber.x script and as the examples says, I tried to load the pdb
> file to tleap using leaprc.lipid11 and leaprc.ff99SB force field files.
>
> However I get errors for the protein part.

Many such errors are really easy to fix (e.g. CHARMM uses out-dated atom and
residue names). But without knowing what sorts of errors you are getting, the
list cannot be of much help.

...dac


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Received on Thu Aug 01 2013 - 07:00:03 PDT
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