Re: [AMBER] MM-GBSA igb=2 or igb=5? [Ref: Exploring Protein Native States and Large-Scale Conformational Changes With a Modified Generalized Born Model]

From: Jason Swails <jason.swails.gmail.com>
Date: Thu, 1 Aug 2013 09:19:57 -0400

On Thu, Aug 1, 2013 at 12:09 AM, Catein Catherine <askamber23.hotmail.com>wrote:

> Dear Profs Case and Simmerling,
> Thanks for your comments. It seems to me that we can only use igb=2 or
> igb=5 when we do the calculation on per residue decomposition energy
> analysis.
> Can I also use igb=8 or igb=1 for decomposition energies?
>

Yes. 

-- 
Jason M. Swails
BioMaPS,
Rutgers University
Postdoctoral Researcher
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Received on Thu Aug 01 2013 - 06:30:04 PDT
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