Hi,
I think that currently you can only apply the boost to all dihedrals
(AMD experts please correct me if I'm wrong).
-Dan
On Sun, Jun 16, 2013 at 10:43 AM, Thomas Evangelidis <tevang3.gmail.com> wrote:
> Dear AMBER list,
>
> Does AMBER12 support selective aMD? Can I apply the dihedral energy boost
> potential just on the torsion angles of the protein in a membrane-protein
> simulation?
>
> thanks,
> Thomas
>
> --
>
> ======================================================================
>
> Thomas Evangelidis
>
> PhD student
> University of Athens
> Faculty of Pharmacy
> Department of Pharmaceutical Chemistry
> Panepistimioupoli-Zografou
> 157 71 Athens
> GREECE
>
> email: tevang.pharm.uoa.gr
>
> tevang3.gmail.com
>
>
> website: https://sites.google.com/site/thomasevangelidishomepage/
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--
-------------------------
Daniel R. Roe, PhD
Department of Medicinal Chemistry
University of Utah
30 South 2000 East, Room 201
Salt Lake City, UT 84112-5820
http://home.chpc.utah.edu/~cheatham/
(801) 587-9652
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Received on Sun Jun 16 2013 - 19:30:02 PDT
