[AMBER] How can I calculate the individual PBSA energies of a large set

From: Changqing Yan <ycqchemical.gmail.com>
Date: Mon, 17 Jun 2013 08:41:01 +0800

Hi,

>From Amber tutorial online, I learn how to calculate MM_PBSA energy of some
MD period. However, in references sometimes there appears large MM_PBSA
energies in one plot. For example, in this article (
http://pubs.acs.org/doi/abs/10.1021/ci100275a), figure 5 gives an example.
 Calculate one by one is obviously unpractical when manipulation. So I want
to know how I can produce MM_PBSA energy in a simple way. Please advise.

Thx and Rgds,
C.Q.
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Received on Sun Jun 16 2013 - 18:00:02 PDT
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