[AMBER] Problem with SMD

From: <moitrayee.mbu.iisc.ernet.in>
Date: Sun, 9 Jun 2013 14:36:55 +0530 (IST)

Dear Amber Users,
I am planning to run an SMD calculation using ncsu_smd usinf Amber12. After
reading the manual and the related Amber posts, I am still confused that whether
if I want to push an atom near another atom by 10angstroms, both the atoms will
move. Is it possible to fix the coordinate of one and move just the other atom
relative to the fixed atom?

I would look forward to your reply.

Thanks a lot,
Moitrayee


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Received on Sun Jun 09 2013 - 02:00:02 PDT
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