Re: [AMBER] new AmberTools13 update has error in configure2 - needs changing

From: ET <sketchfoot.gmail.com>
Date: Mon, 3 Jun 2013 21:13:25 +0100

no worries. i think you are totally right on that as the distro was crappy
ole ubuntu 12.04. :)




On 3 June 2013 19:57, Jason Swails <jason.swails.gmail.com> wrote:

> On Mon, Jun 3, 2013 at 2:02 PM, ET <sketchfoot.gmail.com> wrote:
>
> > cuda toolkit checking part has error in line 614 & 617:
> >
> >
> >
> > if [ "$cudaversion" == "5.0" ]; then
> > echo "CUDA Version $cudaversion detected"
> > nvccflags="$nvccflags $sm30flags $sm35flags"
> > elif [ "$cudaversion" == "4.2" ]; then
> > echo "CUDA Version $cudaversion detected"
> > nvccflags="$nvccflags $sm30flags"
> > else
> > echo "Error: Unsupported CUDA version $cudaversion detected."
> > echo "AMBER requires CUDA version == 4.2 .or. 5.0"
> > exit 1
> > fi
> >
> >
> > Python style operator used instead of bash. so ./configure -cuda gnu
> fails.
> >
>
> This is actually not strictly correct. The code above is perfectly legal
> bash (and that's why it wasn't caught before releasing). It is not,
> however, legal POSIX, and may fail for POSIX-compliant shells.
>
> In particular, Ubuntu uses 'dash' instead of 'bash' as the default /bin/sh
> (you can check the simlink yourself), and 'dash' is known to choke on the
> above lines. (I've only ever seen this type of thing fail for Ubuntu, which
> is the distro I assume you are using...)
>
> I'll make a fix.
>
> Thanks for the report,
> Jason
>
> --
> Jason M. Swails
> Quantum Theory Project,
> University of Florida
> Ph.D. Candidate
> 352-392-4032
> _______________________________________________
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>
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Received on Mon Jun 03 2013 - 13:30:02 PDT
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