Do I need to install both Amber and Amber Tool 13 or Just Amber Tools 13?
Thanks,
Sanat
-----Original Message-----
From: Jason Swails [mailto:jason.swails.gmail.com]
Sent: Thursday, May 30, 2013 9:07 PM
To: AMBER Mailing List
Subject: Re: [AMBER] Error message when using mpirun on amber12_parallel
This is not an error message... This kind of looks like the log file output (in any case, it is describing the work assignments for each processor as well as the updates arising from the dynamic load balancer).
Where are you seeing this output?
HTH,
Jason
On Thu, May 30, 2013 at 7:31 PM, 肖立 <xiaoli19871216.gmail.com> wrote:
> When I use the mpirun to run a protein (np=32), it is reported the
> following error message. However, it seems my protein is still running
> correctly. I'm wondering what the error message means.
> Error Message:
> "
> Initial FFT Slab Distribution Based on Workload Estimate:
>
> FFT slabs assigned to 4 tasks
> Maximum of 19 xy slabs per task
> Maximum of 19 zx slabs per task
> Count of FFT xy slabs assigned to each task:
> 0 0 0 0 0 0 0 18 0 0 0 0 0 0 0 19
> 0 0 0 0 0 0 0 19 0 0 0 0 0 0 0 19
> Count of FFT xz slabs assigned to each task:
> 0 0 0 0 0 0 0 19 0 0 0 0 0 0 0 19
> 0 0 0 0 0 0 0 19 0 0 0 0 0 0 0 18
>
> First FFT Slab Distribution Based on Actual Workload:
>
> FFT slabs assigned to 11 tasks
> Maximum of 7 xy slabs per task
> Maximum of 7 zx slabs per task
> Count of FFT xy slabs assigned to each task:
> 0 0 6 0 0 6 0 0 7 0 0 7 0 0 7 0
> 0 7 0 0 7 0 0 7 0 0 7 0 0 7 0 7
> Count of FFT xz slabs assigned to each task:
> 0 0 7 0 0 7 0 0 7 0 0 7 0 0 7 0
> 0 7 0 0 7 0 0 7 0 0 7 0 0 6 0 6
>
> Image Distribution at run step 355:
>
> Count of images assigned to each task:
> 2826 1464 170 1154 169 1504 1508
> 159
> 1522 415 1454 1492 429 1483 279
> 1091
> 1076 134 1456 97 1488 1404 338
> 1433
> 495 1449 1105 112 1464 120 1464
> 129
>
> Atom Distribution No. 5 at run step 2972:
>
> Count of atoms assigned to each task:
> 1870 1219 6 1488 21 1935 1947
> 6
> 1938 0 1194 1158 3 1836 0
> 1474
> 1477 9 1874 0 1711 1851 66
> 1818
> 18 1743 1131 0 1197 0 1875
> 18
>
> Atom Distribution No. 6 at run step 5889:
>
> Count of atoms assigned to each task:
> 1876 1897 0 1374 12 1761 1932
> 0
> 1917 0 1899 1263 0 1294 0
> 1554
> 1815 0 1413 0 1506 1648 48
> 1776
> 0 1266 1521 0 1200 0 1857
> 54
> "
> Thank you
> Li
> --
> Li Xiao
> University of California, Irvine
> Email: xiaoli19871216.gmail.com
> _______________________________________________
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> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
--
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Candidate
352-392-4032
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Received on Thu May 30 2013 - 18:00:02 PDT
