Hi, Jason:
When I run a mpirun task, I let the system put the error message into a
log file. When I check the log file, I see this kind of message.
Thank you
Li
On Thu, May 30, 2013 at 4:37 PM, Jason Swails <jason.swails.gmail.com>wrote:
> This is not an error message... This kind of looks like the log file
> output (in any case, it is describing the work assignments for each
> processor as well as the updates arising from the dynamic load balancer).
> Where are you seeing this output?
>
> HTH,
> Jason
>
>
> On Thu, May 30, 2013 at 7:31 PM, 肖立 <xiaoli19871216.gmail.com> wrote:
>
> > When I use the mpirun to run a protein (np=32), it is reported the
> > following error message. However, it seems my protein is still running
> > correctly. I'm wondering what the error message means.
> > Error Message:
> > "
> > Initial FFT Slab Distribution Based on Workload Estimate:
> >
> > FFT slabs assigned to 4 tasks
> > Maximum of 19 xy slabs per task
> > Maximum of 19 zx slabs per task
> > Count of FFT xy slabs assigned to each task:
> > 0 0 0 0 0 0 0 18 0 0 0 0 0 0 0 19
> > 0 0 0 0 0 0 0 19 0 0 0 0 0 0 0 19
> > Count of FFT xz slabs assigned to each task:
> > 0 0 0 0 0 0 0 19 0 0 0 0 0 0 0 19
> > 0 0 0 0 0 0 0 19 0 0 0 0 0 0 0 18
> >
> > First FFT Slab Distribution Based on Actual Workload:
> >
> > FFT slabs assigned to 11 tasks
> > Maximum of 7 xy slabs per task
> > Maximum of 7 zx slabs per task
> > Count of FFT xy slabs assigned to each task:
> > 0 0 6 0 0 6 0 0 7 0 0 7 0 0 7 0
> > 0 7 0 0 7 0 0 7 0 0 7 0 0 7 0 7
> > Count of FFT xz slabs assigned to each task:
> > 0 0 7 0 0 7 0 0 7 0 0 7 0 0 7 0
> > 0 7 0 0 7 0 0 7 0 0 7 0 0 6 0 6
> >
> > Image Distribution at run step 355:
> >
> > Count of images assigned to each task:
> > 2826 1464 170 1154 169 1504 1508
> > 159
> > 1522 415 1454 1492 429 1483 279
> > 1091
> > 1076 134 1456 97 1488 1404 338
> > 1433
> > 495 1449 1105 112 1464 120 1464
> > 129
> >
> > Atom Distribution No. 5 at run step 2972:
> >
> > Count of atoms assigned to each task:
> > 1870 1219 6 1488 21 1935 1947
> > 6
> > 1938 0 1194 1158 3 1836 0
> > 1474
> > 1477 9 1874 0 1711 1851 66
> > 1818
> > 18 1743 1131 0 1197 0 1875
> > 18
> >
> > Atom Distribution No. 6 at run step 5889:
> >
> > Count of atoms assigned to each task:
> > 1876 1897 0 1374 12 1761 1932
> > 0
> > 1917 0 1899 1263 0 1294 0
> > 1554
> > 1815 0 1413 0 1506 1648 48
> > 1776
> > 0 1266 1521 0 1200 0 1857
> > 54
> > "
> > Thank you
> > Li
> > --
> > Li Xiao
> > University of California, Irvine
> > Email: xiaoli19871216.gmail.com
> > _______________________________________________
> > AMBER mailing list
> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
> >
>
>
>
> --
> Jason M. Swails
> Quantum Theory Project,
> University of Florida
> Ph.D. Candidate
> 352-392-4032
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
--
Li Xiao
University of California, Irvine
Email: xiaoli19871216.gmail.com
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Received on Thu May 30 2013 - 17:00:04 PDT
