Hi AMBER users,
I am new in AMBER. I want to run mechanical unfolding of a protein using
AMBER.
I had gone through the follwing literature where people have used
mechanical unfolding using CHARMM.
1. Mechanical Unfolding of a Titin Ig Domain: Structure of Transition
State Revealed by Combining Atomic Force Microscopy, Protein Engineering
and Molecular Dynamics Simulations.
Robert B. Best1†, Susan B. Fowler1†, Jose´ L. Toca Herrera1
Annette Steward1, Emanuele Paci2 and Jane Clarke1*
doi:10.1016/S0022-2836(03)00618-1
2. Steered unfolding of ricin A and B chains
Debabani Ganguly, Chaitali Mukhopadhyay
doi:10.1016/j.jmgm.2008.05.001
I would request if anyone can suggest how to start with and if possible is
there any tutorial available for mechanical unfolding in AMBER.
Thanks all.
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Wed May 22 2013 - 11:30:03 PDT
