Re: [AMBER] Fwd: unstable sytem-help

From: Mary Varughese <maryvj1985.gmail.com>
Date: Sat, 11 May 2013 05:14:16 +0530

Thank u sir.
Since i dont know what to do more about force field, i will go with
correcting the initial pose.

thanking you

Mary varughese


On Fri, May 10, 2013 at 4:18 PM, David A Case <case.biomaps.rutgers.edu>wrote:

> On Thu, May 09, 2013, Mary Varughese wrote:
>
> > In fact preparing input in leap all go success. so should i conclude
> > initial docked conformation choosed may be the problem.
>
> As a guess, I would say that a poor initial pose is the most likely source
> of
> the behavior you describe. But the fact that leap doesn't give any errors
> just means that the force field is complete, not that it is correct.
>
> ...dac
>
>
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Received on Fri May 10 2013 - 17:00:02 PDT
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