Re: [AMBER] Fwd: unstable sytem-help

From: David A Case <case.biomaps.rutgers.edu>
Date: Fri, 10 May 2013 06:48:11 -0400

On Thu, May 09, 2013, Mary Varughese wrote:

> In fact preparing input in leap all go success. so should i conclude
> initial docked conformation choosed may be the problem.

As a guess, I would say that a poor initial pose is the most likely source of
the behavior you describe. But the fact that leap doesn't give any errors
just means that the force field is complete, not that it is correct.

...dac


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Received on Fri May 10 2013 - 04:00:03 PDT
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