[AMBER] DNA ligand system broke up- help please

From: Mary Varughese <maryvj1985.gmail.com>
Date: Thu, 9 May 2013 16:15:09 +0530

Hi,

I setup a DNA ligand system; if leap accepts ligand and DNA parameters
without any problem, showing no errors. there is little chance of unbinding
of ligand from the DNA. isnt it?(have experimental evidence of binding)
What else would have gone wrong? i didnt use iwrap, and the system has not
gone outside water. Also i tried reimaging with no effect. The system
really broke up. i couldnt find out any error.
Thanking you in advance

Mary Varughese
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Received on Thu May 09 2013 - 04:00:02 PDT
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