Re: [AMBER] GPU overload

From: Scott Le Grand <varelse2005.gmail.com>
Date: Mon, 4 Mar 2013 16:43:11 -0800

Set process exclusive mode and AMBER will intelligently run on vacant GPUs
(or fail to run if one isn't free).


On Fri, Mar 1, 2013 at 11:57 AM, Hector A. Baldoni <hbaldoni.unsl.edu.ar>wrote:

> Dear Andrew,
>
> yes, this is the command.
> Thank you very much to both for your answers.
>
> Hector.
>
>
>
> > Hi,
> >
> > There is also an exclusive mode one can set using 'nvidia-smi'
> >
> > -c, --compute-mode= Set MODE for compute applications:
> > 0/DEFAULT, 1/EXCLUSIVE_THREAD,
> > 2/PROHIBITED, 3/EXCLUSIVE_PROCESS
> >
> > Best,
> > Andrew
> >
> > On Mar 1, 2013, at 6:43 AM, Daniel Roe <daniel.r.roe.gmail.com> wrote:
> >
> >> Hi,
> >>
> >> I think you may be talking about setting the CUDA_VISIBLE_DEVICES
> >> environment variable. For example, if you have two CUDA GPUs on your
> >> system, they will by default be known as devices 0 and 1. To ensure
> >> your next job runs on the 2nd device, you would (in bash) type:
> >>
> >> export CUDA_VISIBLE_DEVICES=1
> >>
> >> More details are on this page: http://ambermd.org/gpus/
> >>
> >> -Dan
> >>
> >> On Fri, Mar 1, 2013 at 6:42 AM, Baldoni Hector Armando
> >> <hbaldoni.unsl.edu.ar> wrote:
> >>> Dear Amber users,
> >>>
> >>> I want to know if anyone remembers which CUDA flag should be setup to
> >>> prevent GPU overload, avoiding a second job execution in the same GPU.
> >>>
> >>> Many thank you.
> >>>
> >>> Hector.
> >>>
> >>> --
> >>> ---------------------------------------
> >>> Dr. Hector A. Baldoni
> >>>
> >>> Area de Quimica General e Inorganica (FQByF)
> >>> Instituto de Matematica Aplicada San Luis (IMASL)
> >>> Universidad Nacional de San Luis (UNSL)
> >>> Chacabuco 917
> >>> 5700 San Luis - Argentina
> >>> hbaldoni.unsl.edu.ar
> >>> ---------------------------------------
> >>>
> >>> _______________________________________________
> >>> AMBER mailing list
> >>> AMBER.ambermd.org
> >>> http://lists.ambermd.org/mailman/listinfo/amber
> >>
> >>
> >>
> >> --
> >> -------------------------
> >> Daniel R. Roe, PhD
> >> Department of Medicinal Chemistry
> >> University of Utah
> >> 30 South 2000 East, Room 201
> >> Salt Lake City, UT 84112-5820
> >> http://home.chpc.utah.edu/~cheatham/
> >> (801) 587-9652
> >> (801) 585-9119 (Fax)
> >>
> >> _______________________________________________
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> >
> >
> > _______________________________________________
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> > http://lists.ambermd.org/mailman/listinfo/amber
> >
>
>
> --------------------------------------
> Dr. Hector A. Baldoni
> Area de Quimica General e Inorganica
> Universidad Nacional de San Luis
> Chacabuco 917 (D5700BWS)
> San Luis - Argentina
> hbaldoni at unsl dot edu dot ar
> Tel.:+54-(0)266-4423789 ext. 157
> --------------------------------------
>
>
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>
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Received on Mon Mar 04 2013 - 17:00:03 PST
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