Hi David!
My name is Alex, i write to you because i cannot install amber12 in
parallel on mac OS 10.8 Lion,
so i follow the instructions in the web page
http://jswails.wikidot.com/installing-amber12-and-ambertools-12
and also add the next line to the amber pack, that was posted in the forum:
*in $AMBERHOME/AmberTools/src/leap/src/leap, somewhere after the first
line: *
* *
*.c.o: *
*$(CC) -c -I$(XHOME)/include $(CFLAGS) $(AMBERCFLAGS) -o $. $** *
after this i follow all the instructions:
cd amber12
export AMBERHOME=`pwd`
./patch_amber.py --update-tree
./configure -mpi gnu
make install
and this was the output from terminal at the end of the process:
cd src/leap && make install
gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ \
-o teLeap basics.o sysdepend.o stringExtra.o varArray.o getline.o
avl.o pdb_format.o pdb_read.o pdb_sprntf.o pdb_sscanf.o pdb_write.o
vector.o zMatrix.o sort.o bag.o hash.o dictionary.o database.o nVector.o
ring.o matrix.o fortran.o displayer.o assoc.o atom.o byteArray.o
collection.o container.o internal.o list.o loop.o molecule.o oDouble.o
oInteger.o oString.o objekt.o parmSet.o residue.o unit.o unitio.o tripos.o
graphUtil.o select.o amber.o build.o elements.o library.o chirality.o
minimizer.o model.o parmLib.o pdbFile.o mol2File.o mol3File.o tools.o
variables.o parser.o help.o helptext.o octree.o commands.o mathop.o block.o
restraint.o hybrid.o tLeap.o -lm
gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE
-DBINTRAJ -o
gcc: error: missing filename after '-o'
gcc: fatal error: no input files
compilation terminated.
make[4]: *** [xTank.o] Error 1
make[3]: *** [install_xleap] Error 2
make[2]: *** [install] Error 2
make[1]: *** [serial] Error 2
make: *** [install] Error 2
N-terminal:amber12 javieralejandrorendoncarrillo$
--
LBG Javier Alejandro Rendón Carrillo
Laboratorio de Investigación y Desarrollo
Tel. (044) 81-80-52-05-76
El control del espacio y el estricto manejo
del tiempo son factores determinantes
para aquellas personas que pretendan
alcanzar y sostener un desempeño
eficiente.
CONTROL DEL ESPACIO: Orden en las
cosas, en los archivos y en los registros.
ESTRICTO MANEJO DEL TIEMPO: Ser
puntual y saber fijar prioridades y
cantidades de tiempo
M. Kant
Año-1780
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Tue Feb 26 2013 - 17:00:02 PST
