Yes this is possible. You need to create necessary parameters and load it
to leap in order to simulate these kind of systems. People use neutral
gold atoms on the gold surface with vdw parameters, which prevent the gold
atoms to fall apart. You will also need the necessary parameters for
linker that attaches the nucleic acids to the gold surface.
Ilyas Yildirim, Ph.D.
-----------------------------------------------------------
= Department of Chemistry - 2145 Sheridan Road =
= Northwestern University - Evanston, IL 60208 =
= Ryan Hall #4035 (Nano Building) - Ph.: (847)467-4986 =
=
http://www.pas.rochester.edu/~yildirim/ =
-----------------------------------------------------------
On Wed, 13 Feb 2013, Barbault Florent wrote:
> Hello,
> I am interested in the simulation of a nucleic acid linked on a gold
> surface. I read few papers about this sort of simulations with CHARMM
> or NAMD softwares, but I am wondering to know if someone had try (and
> had succeed) to do this sort of simulation with amber....
>
> Regards
> Florent Barbault
>
> -------------------------------------------------
> Dr Florent Barbault
> Maitre de conferences / Associate professor
>
> Universite Paris Diderot
> Laboratoire ITODYS
> 15 rue Jean de Baïf, bâtiment Lavoisier
> 75013 Paris FRANCE
> http://florentbarbault.wordpress.com/
> tel : (33) 01-57-27-88-50
> e-mail : florent.barbault.univ-paris-diderot.fr
> -------------------------------------------------
>
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>
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Received on Wed Feb 13 2013 - 17:30:03 PST
