Thanks Ross
On Thu, Jan 31, 2013 at 6:56 PM, ros <rodrigogalindo.gmail.com> wrote:
> The .gnu files the cpptraj generates can be reloaded in GNUplot again, and
> then, rescale both to the same size.
>
> Something like:
>
> -------------------------------------------------------------------------
> set terminal jpeg enhanced size 1280,1024
> set output 'coolgraph.jpg'
> set pm3d map
> set palette gray
> set xrange [0:3]
> set yrange [0:3]
> splot 'file-from-cpptraj.gnu'
> -------------------------------------------------------------------------
>
> GNUPlot website has tons of examples.
>
> Hope that helps.
>
> Rodrigo.
>
>
> On Thu, Jan 31, 2013 at 10:36 AM, HM <scienceamber.gmail.com> wrote:
>
> > I have one further query in the same line. I am interested in comparing
> the
> > two systems in terms of their 2drms plot. But by default one plot
> > (generated by .gnu output file) ranges between -2 to +2 and another
> system
> > ranges between -3 to +3. Due to which It becomes difficult to compare it
> at
> > first look.
> > Again this is related to gnuplot but it would be nice if I can get help
> how
> > can i change colorscale range.
> >
> > THanks,
> > HM
> >
> > On Thu, Jan 31, 2013 at 6:32 PM, HM <scienceamber.gmail.com> wrote:
> >
> > > Thanks Thomas, Igor. And thanks Daniel, that helps a lot.
> > >
> > > On Wed, Jan 30, 2013 at 7:03 PM, Daniel Roe <daniel.r.roe.gmail.com
> > >wrote:
> > >
> > >> Hi,
> > >>
> > >> I use the attached script to quickly convert gnuplot files output from
> > >> cpptraj to JPEG files. It just modifies the gnuplot commands so that
> > >> it writes to a jpg.
> > >>
> > >> Usage: Gnu2jpg.sh <inputfile> [rect] [square] [size <x,y>]
> > >>
> > >> Example: Given the gnuplot output dssp.gnu,
> > >>
> > >> ./Gnu2jpg.sh dssp.gnu
> > >>
> > >> outputs dssp.jpg.
> > >>
> > >> -Dan
> > >>
> > >> On Wed, Jan 30, 2013 at 7:13 AM, HM <scienceamber.gmail.com> wrote:
> > >> > Hi All,
> > >> > I used cpptraj to generate plot for secondary structure (in .gnu
> > form).
> > >> Now
> > >> > I want to save this as image. But I do not see any option to save
> it,
> > >> there
> > >> > is only one option i.e. copy to clipboard. When I try to copy it and
> > >> paste
> > >> > in OpenOffice it does not work. I know it is not related to AMBER
> but
> > >> guys
> > >> > help me.
> > >> >
> > >> > Thanks,
> > >> > Hirdesh
> > >> > _______________________________________________
> > >> > AMBER mailing list
> > >> > AMBER.ambermd.org
> > >> > http://lists.ambermd.org/mailman/listinfo/amber
> > >>
> > >>
> > >>
> > >> --
> > >> -------------------------
> > >> Daniel R. Roe, PhD
> > >> Department of Medicinal Chemistry
> > >> University of Utah
> > >> 30 South 2000 East, Room 201
> > >> Salt Lake City, UT 84112-5820
> > >> http://home.chpc.utah.edu/~cheatham/
> > >> (801) 587-9652
> > >> (801) 585-9119 (Fax)
> > >>
> > >> _______________________________________________
> > >> AMBER mailing list
> > >> AMBER.ambermd.org
> > >> http://lists.ambermd.org/mailman/listinfo/amber
> > >>
> > >>
> > >
> > _______________________________________________
> > AMBER mailing list
> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
> >
> _______________________________________________
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>
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Received on Fri Feb 01 2013 - 07:30:02 PST
