Thank you for the response case (dac?)!
I figured out that I could run antechamber with
"$AMBERHOME/AmberTools/bin/antechamber hexane.pdb -fi pdb -o hexane.mol2
-fo mol2 -c bcc -s 2"
However, I cannot for the life of me figure out where to put hexane.pdb in
order for it to be read in (can you tell I am a Linux noobie?).
Thanks again, Jonathan
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Received on Mon Jan 28 2013 - 19:00:03 PST
