Hi all,
I am trying to install a mpi-version of amber10 on our cluster. I have
just installed the serial version and it works fine.
module list gives me this
1) modules 2) intel-mpi
and I configure with the following options
./configure_amber -intelmpi -nobintraj -verbose -nosanderidc gfortran
which gives me this
Installation of Amber10 (parallel) is complete at Sun Jan 27 23:09:42 PST 2013.
next I go to ../test and
export DO_PARALLEL='mpirun -np 4'
and make test.parallel which gives me this error
cd cytosine && ./Run.cytosine
/etc/tmi.conf: No such file or directory
/etc/tmi.conf: No such file or directory
/etc/tmi.conf: No such file or directory
/etc/tmi.conf: No such file or directory
[1] MPI startup(): tmi fabric is not available and fallback fabric is
not enabled
[2] MPI startup(): tmi fabric is not available and fallback fabric is
not enabled
[0] MPI startup(): tmi fabric is not available and fallback fabric is
not enabled
[3] MPI startup(): tmi fabric is not available and fallback fabric is
not enabled
and on one of the nodes I get the following error
sander.MPI: error while loading shared libraries: libmpi.so.4: cannot
open shared object file: No such file or directory
how to fix this? Thanks
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Received on Sun Jan 27 2013 - 23:30:02 PST
