Re: [AMBER] Building a new structure!

From: David A Case <case.biomaps.rutgers.edu>
Date: Wed, 23 Jan 2013 08:21:56 -0500

On Tue, Jan 22, 2013, Ibrahim Said wrote:

> I am a very newbie for Amber. I am trying to construct a protein and
> fructose complex but I can not find a procedure or a tutorial steps to
> carry out.

You don't say whether this is a covalent or non-covalent interaction between
the protein and the fructose. For a covalent interaction, the glycam builder
may help; non-covalent interactions would handle fructose like any other
ligand: use load both the protein ff you want and the glycam ff.

...dac


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Received on Wed Jan 23 2013 - 05:30:03 PST
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