Re: [AMBER] problem starting amber

From: Ross Walker <ross.rosswalker.co.uk>
Date: Fri, 18 Jan 2013 06:40:12 -0800

Hi Ayesha,

Include the 'bin' term in the path. So

$AMBERHOME/bin/tleap

and

$AMBERHOME/bin/sander

All the best
Ross

/\
\/
|\oss Walker

---------------------------------------------------------
| Assistant Research Professor |
| San Diego Supercomputer Center |
| Adjunct Assistant Professor |
| Dept. of Chemistry and Biochemistry |
| University of California San Diego |
| NVIDIA Fellow |
| http://www.rosswalker.co.uk | http://www.wmd-lab.org |
| Tel: +1 858 822 0854 | EMail:- ross.rosswalker.co.uk |
---------------------------------------------------------

Note: Electronic Mail is not secure, has no guarantee of delivery, may not
be read every day, and should not be used for urgent or sensitive issues.







On 1/18/13 6:34 AM, "Ayesha Fatima" <ayeshafatima.69.gmail.com> wrote:

>Dear all,
>i am new to AMBER. i installed amber12 serial and parallel on my computer.
>now when i want to start the program, i dont know how. i look at all the
>tutorials and they say start 'tleap'. before that i should set my
>amberhome
>environment. when i do
>echo AMBERHOME
>i get the path so i set the path before writing tleap. but the error comes
>"command not found".
>could anyone guide me what is the right way to start the serial or
>parallel
>computing pathway. i think the error is there but since i am not a compuet
>background person, very problematic!
>thanks in advance
>ayesha, malaysia
>_______________________________________________
>AMBER mailing list
>AMBER.ambermd.org
>http://lists.ambermd.org/mailman/listinfo/amber



_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Fri Jan 18 2013 - 07:00:03 PST
Custom Search