Hi,
On Thu, Jan 17, 2013 at 11:50 AM, <mhclewett.msn.com> wrote:
> ... with the coordinates looking like a child's scribble (picture below)
I didn't see any picture attached, but what you describe sounds like
maybe when you are visualizing the trajectory that the number of atoms
in the topology file doesn't match the trajectory file. It could also
happen if you load an Amber trajectory that has box coordinates with
"Amber Coordinates" instead of "Amber Coordinates with Periodic Box".
-Dan
--
-------------------------
Daniel R. Roe, PhD
Department of Medicinal Chemistry
University of Utah
30 South 2000 East, Room 201
Salt Lake City, UT 84112-5820
http://home.chpc.utah.edu/~cheatham/
(801) 587-9652
(801) 585-9119 (Fax)
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Received on Thu Jan 17 2013 - 11:30:03 PST
