hello, im trying to make my installation in parallel version...for that i come across following error. can anyone tell me what is this and how to cope it?
[nuria.zinc ~/amber12]$ ./configure -cuda intel
Checking for updates...
Amber12 is up to date
AmberTools12 has 3 unapplied patches: 31, 32, 33
There are patches available. Do you want to apply them now? [y/n] (Recommended Y)
y
Determining patches to download for AmberTools12
Downloading bugfix.31
Downloading bugfix.32
Downloading bugfix.33
Determining patches to download for Amber12
Amber12 is up to date. Nothing to download
Applying AmberTools12 patches
Error or warning during patching process for .patches/AmberTools_Unapplied_Patches/bugfix.31:
Reversed (or previously applied) patch detected! Skipping patch.
1 out of 1 hunk ignored -- saving rejects to file AmberTools/src/cpptraj/src/Action_AutoImage.cpp.rej
Reversed (or previously applied) patch detected! Skipping patch.
1 out of 1 hunk ignored -- saving rejects to file AmberTools/src/cpptraj/src/Action_Hbond.cpp.rej
1 out of 1 hunk FAILED -- saving rejects to file AmberTools/src/cpptraj/src/Action_Image.cpp.rej
Reversed (or previously applied) patch detected! Skipping patch.
1 out of 1 hunk ignored -- saving rejects to file AmberTools/src/cpptraj/src/ArgList.cpp.rej
Reversed (or previously applied) patch detected! Skipping patch.
1 out of 1 hunk ignored -- saving rejects to file AmberTools/src/cpptraj/src/ArgList.h.rej
Reversed (or previously applied) patch detected! Skipping patch.
1 out of 1 hunk ignored -- saving rejects to file AmberTools/src/cpptraj/src/CpptrajState.cpp.rej
Reversed (or previously applied) patch detected! Skipping patch.
1 out of 1 hunk ignored -- saving rejects to file AmberTools/src/cpptraj/src/CpptrajState.h.rej
Reversed (or previously applied) patch detected! Skipping patch.
1 out of 1 hunk ignored -- saving rejects to file AmberTools/src/cpptraj/src/DistRoutines.cpp.rej
1 out of 2 hunks FAILED -- saving rejects to file AmberTools/src/cpptraj/src/Frame.cpp.rej
1 out of 1 hunk FAILED -- saving rejects to file AmberTools/src/cpptraj/src/Frame.h.rej
Reversed (or previously applied) patch detected! Skipping patch.
3 out of 3 hunks ignored -- saving rejects to file AmberTools/src/cpptraj/src/Traj_CharmmDcd.cpp.rej
4 out of 5 hunks FAILED -- saving rejects to file AmberTools/src/cpptraj/src/main.cpp.rej
Automatic patching failed! Check the errors before re-configuring
NOT updating your tree and continuing anyway.
Searching for python2... Found python2.4: /usr/bin/python2.4
Error: CUDA_HOME is not set. This must point to your NVIDIA tools installation
Configure failed due to the errors above!
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Received on Mon Jan 14 2013 - 02:00:03 PST
