Hello,
AMBER users,
I am trying to calculate RMS2D using cpptraj but getting no output and come up with following error. If anyone know, kindly help me out. I have re-compiled the amber package as following error says something like ...
--------------------------
CTION OUTPUT:
RMS2D: Calculating RMSDs between each frame (739182025 total).
0% 10% 10% 10% 10% 10% 10% 10% 10% 20% 20% 20% 20% 20% 20% 20% 20% 30% 30% 30% 30% 30% 30% 30% 30% 40% 40% 40% 40% 40% 40% 40% 40% 50% 50% 50% 50% 50% 50% 50% 60% 60% 60% 60% 60% 60% 70% 70% 70% 70% 70% 70% 80% 80% 80% 80% 80% 90% 90% 90% 90% 100% 100% 100% 100%
===================================================================================
= BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES
= EXIT CODE: 9
= CLEANING UP REMAINING PROCESSES
= YOU CAN IGNORE THE BELOW CLEANUP MESSAGES
===================================================================================
YOUR APPLICATION TERMINATED WITH THE EXIT STRING: Killed (signal 9)
This typically refers to a problem with your application.
Please see the FAQ page for debugging suggestions
-------------------------------------------------------------------------
The syntax for the rms2d, I used is as follows..
----------
rms2d first rmsout comt-backbone.rms2d.gnu .C,CA,N time 1
--------------
Thanks in advance
Regards
Tarique
-----------------------------
Syed Tarique Moin, Ph.D.
Post Doctoral Fellow,
Institute of General, Inorganic and Theoretical Chemistry
Center for Chemistry and Biomedicine
University of Innsbruck
Innrain 80-82
A-6020 Innsbruck
AUSTRIA
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Received on Sat Jan 12 2013 - 04:00:02 PST
