[AMBER] Amber12 with Plumed

From: Rajeswari A. <rajeswari.biotech.gmail.com>
Date: Mon, 10 Dec 2012 16:02:00 +0530

Dear amberusers,
I want to know whether Plumed 1.3 is compatible with amber12? i installed
amber 12 along with plumed1.3. During installation there was no error
message. But all plumed tests were failed and for my own system when i run
sander with plumed, it says "error in reading namelist cntrl". my input
file is below which has additional 2flags for plumed.

 &cntrl
  imin = 0, ntx = 7, irest = 1,
  ntpr = 1000, ntwx = 1000, ntwe = 0, ntwprt=0,
  ntc = 2, ntf = 2, iwrap = 1, ioutfm = 1,
  nstlim = 500000, dt =0.002,
  tempi=300.0, temp0 = 300.0, ntt =1, tautp =2.0,
  ntb = 2, ntp = 1, taup = 2.0, pres0 =1.0, cut = 12.0,
  plumed=1 , plumedfile=’plumed.dat’
 &end

Waiting for your response!

Thank you,
Rajeswari A
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Received on Mon Dec 10 2012 - 03:00:09 PST
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